LinkageError starting JBossAS 5.0.0CR1

[legolas]

Hi all,

I've just downloaded and unzipped the JBossAS 5.0.0CR1 package, and eager as I am, I immediately started it using bin\run.bat.
This error appeared on the console:

14:58:48,222 ERROR [AbstractKernelController] Error installing to Create: name=ManagedConnectionFactoryParserDeployer state=Configured
java.lang.LinkageError: JAXB 2.0 API is being loaded from the bootstrap classloader, but this RI (from vfszip:/C:/Java/jboss-5.0.0.CR1/lib/jaxb-impl.jar/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.1 API. Use the endorsed directory mechanism to place jaxb-api.jar in the bootstrap classloader. (See http://java.sun.com/j2se/1.5.0/docs/guide/standards/)
 at com.sun.xml.bind.v2.model.impl.ModelBuilder.<clinit>(ModelBuilder.java:173)
 at com.sun.xml.bind.v2.runtime.JAXBContextImpl.getTypeInfoSet(JAXBContextImpl.java:422)
 at com.sun.xml.bind.v2.runtime.JAXBContextImpl.<init>(JAXBContextImpl.java:286)
 at com.sun.xml.bind.v2.ContextFactory.createContext(ContextFactory.java:139)
 at com.sun.xml.bind.v2.ContextFactory.createContext(ContextFactory.java:117)
 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
 at java.lang.reflect.Method.invoke(Method.java:597)
 at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:210)
 at javax.xml.bind.ContextFinder.find(ContextFinder.java:368)
 at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:574)
 at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:522)
 at org.jboss.resource.deployers.ManagedConnectionFactoryParserDeployer.create(ManagedConnectionFactoryParserDeployer.java:120)
 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
 at java.lang.reflect.Method.invoke(Method.java:597)
 at org.jboss.reflect.plugins.introspection.ReflectionUtils.invoke(ReflectionUtils.java:56)
 at org.jboss.reflect.plugins.introspection.ReflectMethodInfoImpl.invoke(ReflectMethodInfoImpl.java:110)
 at org.jboss.joinpoint.plugins.BasicMethodJoinPoint.dispatch(BasicMethodJoinPoint.java:66)
 at org.jboss.kernel.plugins.dependency.KernelControllerContextAction$JoinpointDispatchWrapper.execute(KernelControllerContextAction.java:241)
 at org.jboss.kernel.plugins.dependency.ExecutionWrapper.execute(ExecutionWrapper.java:45)
 at org.jboss.kernel.plugins.dependency.KernelControllerContextAction.dispatchExecutionWrapper(KernelControllerContextAction.java:109)
 at org.jboss.kernel.plugins.dependency.KernelControllerContextAction.dispatchJoinPoint(KernelControllerContextAction.java:70)
 at org.jboss.kernel.plugins.dependency.LifecycleAction.installActionInternal(LifecycleAction.java:221)
 at org.jboss.kernel.plugins.dependency.InstallsAwareAction.installAction(InstallsAwareAction.java:54)
 at org.jboss.kernel.plugins.dependency.InstallsAwareAction.installAction(InstallsAwareAction.java:42)
 at org.jboss.dependency.plugins.action.SimpleControllerContextAction.simpleInstallAction(SimpleControllerContextAction.java:62)
 at org.jboss.dependency.plugins.action.AccessControllerContextAction.install(AccessControllerContextAction.java:71)
 at org.jboss.dependency.plugins.AbstractControllerContextActions.install(AbstractControllerContextActions.java:51)
 at org.jboss.dependency.plugins.AbstractControllerContext.install(AbstractControllerContext.java:348)
 at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:1392)
 at org.jboss.dependency.plugins.AbstractController.incrementState(AbstractController.java:784)
 at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:912)
 at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:834)
 at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:624)
 at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:442)
 at org.jboss.deployers.vfs.deployer.kernel.BeanMetaDataDeployer.deploy(BeanMetaDataDeployer.java:88)
 at org.jboss.deployers.vfs.deployer.kernel.BeanMetaDataDeployer.deploy(BeanMetaDataDeployer.java:46)
 at org.jboss.deployers.spi.deployer.helpers.AbstractSimpleRealDeployer.internalDeploy(AbstractSimpleRealDeployer.java:62)
 at org.jboss.deployers.spi.deployer.helpers.AbstractRealDeployer.deploy(AbstractRealDeployer.java:50)
 at org.jboss.deployers.plugins.deployers.DeployerWrapper.deploy(DeployerWrapper.java:174)
 at org.jboss.deployers.plugins.deployers.DeployersImpl.doInstallParentFirst(DeployersImpl.java:970)
 at org.jboss.deployers.plugins.deployers.DeployersImpl.doInstallParentFirst(DeployersImpl.java:991)
 at org.jboss.deployers.plugins.deployers.DeployersImpl.install(DeployersImpl.java:911)
 at org.jboss.dependency.plugins.AbstractControllerContext.install(AbstractControllerContext.java:348)
 at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:1392)
 at org.jboss.dependency.plugins.AbstractController.incrementState(AbstractController.java:784)
 at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:912)
 at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:834)
 at org.jboss.dependency.plugins.AbstractController.change(AbstractController.java:672)
 at org.jboss.dependency.plugins.AbstractController.change(AbstractController.java:455)
 at org.jboss.deployers.plugins.deployers.DeployersImpl.process(DeployersImpl.java:594)
 at org.jboss.deployers.plugins.main.MainDeployerImpl.process(MainDeployerImpl.java:541)
 at org.jboss.system.server.profileservice.ProfileServiceBootstrap.loadProfile(ProfileServiceBootstrap.java:250)
 at org.jboss.system.server.profileservice.ProfileServiceBootstrap.start(ProfileServiceBootstrap.java:135)
 at org.jboss.bootstrap.AbstractServerImpl.start(AbstractServerImpl.java:409)
 at org.jboss.Main.boot(Main.java:209)
 at org.jboss.Main$1.run(Main.java:544)
 at java.lang.Thread.run(Thread.java:619)

I am running JBoss on a Windows Vista SP1 machine with a sun JVM build 1.6.0_04-b12.

Did I forget a configuration step, or should this run OOTB?

Thanks,
Marcel

[jaikiran]

Did you do any changes to the clean JBoss? Also do you have an jaxb related jar file in your classpath which might be causing this conflict? I have downloaded CR1 and have been able to get it running with this issue.

[legolas]

No I haven't changed anything to the JBoss installation nor to the JVM installation.
The classpath does not contain any jaxb related jar outside of the default as supplied with JBoss and the JDK

Marcel

[jaikiran]

"jaikiran" wrote:
I have downloaded CR1 and have been able to get it running with this issue.

Spoke too soon :) Was using JDK 5 with JBoss-5.0 CR1 and everything works. Switched to Java 1.6 and i see the same LinkageErrors:

18:45:53,619 INFO [CopyMechanism] VFS temp dir: D:\jboss-5.0.0.CR1\server\jaikiran\tmp
18:45:53,619 INFO [ZipEntryContext] VFS force nested jars copy-mode is enabled.
18:45:58,307 INFO [ServerInfo] Java version: 1.6.0_03,Sun Microsystems Inc.
18:45:58,307 INFO [ServerInfo] Java VM: Java HotSpot(TM) Server VM 1.6.0_03-b05,Sun Microsystems Inc.
18:45:58,307 INFO [ServerInfo] OS-System: Windows 2003 5.2,x86
18:45:58,401 INFO [JMXKernel] Legacy JMX core initialized
18:46:00,963 INFO [MetaDataAwareProfile] Using profile root:D:\jboss-5.0.0.CR1\server\jaikiran
18:46:05,557 INFO [WebService] Using RMI server codebase: http://ps3346:8083/
18:46:12,698 ERROR [AbstractKernelController] Error installing to Create: name=ManagedConnectionFactoryParserDeployer state=Configured
java.lang.LinkageError: JAXB 2.0 API is being loaded from the bootstrap classloader, but this RI (from vfszip:/D:/jboss-5.0.0.CR1/lib/jaxb-impl.jar/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.1 API. Use the endorsed directory mechanism to place jaxb-api.jar in the bootstrap classloader. (See http://java.sun.com/j2se/1.5.0/docs/guide/standards/)
 at com.sun.xml.bind.v2.model.impl.ModelBuilder.<clinit>(ModelBuilder.java:173)
 at com.sun.xml.bind.v2.runtime.JAXBContextImpl.getTypeInfoSet(JAXBContextImpl.java:422)
 at com.sun.xml.bind.v2.runtime.JAXBContextImpl.<init>(JAXBContextImpl.java:286)
 at com.sun.xml.bind.v2.ContextFactory.createContext(ContextFactory.java:139)
 at com.sun.xml.bind.v2.ContextFactory.createContext(ContextFactory.java:117)
 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
 at java.lang.reflect.Method.invoke(Method.java:597)
 at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:210)
 at javax.xml.bind.ContextFinder.find(ContextFinder.java:368)
 at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:574)
 at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:522)
 at org.jboss.resource.deployers.ManagedConnectionFactoryParserDeployer.create(ManagedConnectionFactoryParserDeployer.java:120)
 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
 at java.lang.reflect.Method.invoke(Method.java:597)
 at org.jboss.reflect.plugins.introspection.ReflectionUtils.invoke(ReflectionUtils.java:56)
 at org.jboss.reflect.plugins.introspection.ReflectMethodInfoImpl.invoke(ReflectMethodInfoImpl.java:110)
 at org.jboss.joinpoint.plugins.BasicMethodJoinPoint.dispatch(BasicMethodJoinPoint.java:66)
 at org.jboss.kernel.plugins.dependency.KernelControllerContextAction$JoinpointDispatchWrapper.execute(KernelControllerContextAction.java:241)
 at org.jboss.kernel.plugins.dependency.ExecutionWrapper.execute(ExecutionWrapper.java:45)
 at org.jboss.kernel.plugins.dependency.KernelControllerContextAction.dispatchExecutionWrapper(KernelControllerContextAction.java:109)
 at org.jboss.kernel.plugins.dependency.KernelControllerContextAction.dispatchJoinPoint(KernelControllerContextAction.java:70)
 at org.jboss.kernel.plugins.dependency.LifecycleAction.installActionInternal(LifecycleAction.java:221)
 at org.jboss.kernel.plugins.dependency.InstallsAwareAction.installAction(InstallsAwareAction.java:54)
 at org.jboss.kernel.plugins.dependency.InstallsAwareAction.installAction(InstallsAwareAction.java:42)
 at org.jboss.dependency.plugins.action.SimpleControllerContextAction.simpleInstallAction(SimpleControllerContextAction.java:62)
 at org.jboss.dependency.plugins.action.AccessControllerContextAction.install(AccessControllerContextAction.java:71)
 at org.jboss.dependency.plugins.AbstractControllerContextActions.install(AbstractControllerContextActions.java:51)
 at org.jboss.dependency.plugins.AbstractControllerContext.install(AbstractControllerContext.java:348)
 at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:1392)
 at org.jboss.dependency.plugins.AbstractController.incrementState(AbstractController.java:784)
 at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:912)
 at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:834)
 at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:624)
 at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:442)
 at org.jboss.deployers.vfs.deployer.kernel.BeanMetaDataDeployer.deploy(BeanMetaDataDeployer.java:88)
 at org.jboss.deployers.vfs.deployer.kernel.BeanMetaDataDeployer.deploy(BeanMetaDataDeployer.java:46)
 at org.jboss.deployers.spi.deployer.helpers.AbstractSimpleRealDeployer.internalDeploy(AbstractSimpleRealDeployer.java:62)
 at org.jboss.deployers.spi.deployer.helpers.AbstractRealDeployer.deploy(AbstractRealDeployer.java:50)
 at org.jboss.deployers.plugins.deployers.DeployerWrapper.deploy(DeployerWrapper.java:174)
 at org.jboss.deployers.plugins.deployers.DeployersImpl.doInstallParentFirst(DeployersImpl.java:970)
 at org.jboss.deployers.plugins.deployers.DeployersImpl.doInstallParentFirst(DeployersImpl.java:991)
 at org.jboss.deployers.plugins.deployers.DeployersImpl.install(DeployersImpl.java:911)
 at org.jboss.dependency.plugins.AbstractControllerContext.install(AbstractControllerContext.java:348)
 at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:1392)
 at org.jboss.dependency.plugins.AbstractController.incrementState(AbstractController.java:784)
 at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:912)
 at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:834)
 at org.jboss.dependency.plugins.AbstractController.change(AbstractController.java:672)
 at org.jboss.dependency.plugins.AbstractController.change(AbstractController.java:455)
 at org.jboss.deployers.plugins.deployers.DeployersImpl.process(DeployersImpl.java:594)
 at org.jboss.deployers.plugins.main.MainDeployerImpl.process(MainDeployerImpl.java:541)
 at org.jboss.system.server.profileservice.ProfileServiceBootstrap.loadProfile(ProfileServiceBootstrap.java:250)
 at org.jboss.system.server.profileservice.ProfileServiceBootstrap.start(ProfileServiceBootstrap.java:135)
 at org.jboss.bootstrap.AbstractServerImpl.start(AbstractServerImpl.java:409)
 at org.jboss.Main.boot(Main.java:209)
 at org.jboss.Main$1.run(Main.java:544)
 at java.lang.Thread.run(Thread.java:619)
18:46:18,526 ERROR [ProfileServiceBootstrap] Failed to load profile: Summary of incomplete deployments (SEE PREVIOUS ERRORS FOR DETAILS):

*** CONTEXTS IN ERROR: Name -> Error

ManagedConnectionFactoryParserDeployer -> java.lang.LinkageError: JAXB 2.0 API is being loaded from the bootstrap classloader, but this RI (from vfszip:/D:/jboss-5.0.0.CR1/lib/jaxb-impl.jar/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.1 API. Use the endorsed directory mechanism to place jaxb-api.jar in the bootstrap classloader. (See http://java.sun.com/j2se/1.5.0/docs/guide/standards/)


18:46:18,526 INFO [ServerImpl] JBoss (Microcontainer) [5.0.0.CR1 (build: SVNTag=JBoss_5_0_0_CR1 date=200806301254)] Started in 27s:438ms

[jaikiran]

Based on what i see in one of the comments in JIRA issue, i copied %JBOSS_HOME%/lib/jaxb-api.jar to %JBOSS_HOME%\lib\endorsed. Restarted JBoss with Java 1.6. This time it booted without any errors.

P.S: My sample application does not have webservices, so i am not sure if only this jar needs to be copied. There might be other jars too, as mentioned in one of the comments at http://jira.jboss.com/jira/browse/JBWS-1439

[dimitris]

Can you please specify O/S and JDK make/version?

You probably need to move to the latest jdk1.6

[legolas]

Thanks this seems to do the job.
I have no appliciaton at all running in it, just extracted the zip and ran it.
Does this have any side-effect when running on JDK 5?

If not this could be made the default.

Ciao,
Marcel

[dimitris]

Again, which jdk are you using?

JDK6 Update 4 introduced a significant change:

http://weblogs.java.net/blog/ramapulavarthi/archive/2008/01/jaxws_21_and_ja.html

[jaikiran]

Can you please specify O/S and JDK make/version?

You probably need to move to the latest jdk1.6

19:46:35,039 INFO [ZipEntryContext] VFS force nested jars copy-mode is enabled.
19:46:39,774 INFO [ServerInfo] Java version: 1.6.0_03,Sun Microsystems Inc.
19:46:39,774 INFO [ServerInfo] Java VM: Java HotSpot(TM) Server VM 1.6.0_03-b05,Sun Microsystems Inc.
19:46:39,774 INFO [ServerInfo] OS-System: Windows 2003 5.2,x86

I'll see if there's a latest JDK 1.6 version available and try that one.

[jaikiran]

Downloaded the latest available version of Sun JDK 1.6 (Java SE 6 Update 10 Beta). A clean installation of JBoss CR1 with this version boots without any errors.

20:21:57,171 INFO [CopyMechanism] VFS temp dir: D:\jboss-5.0.0.CR1\server\jaikiran\tmp
20:21:57,171 INFO [ZipEntryContext] VFS force nested jars copy-mode is enabled.
20:22:01,577 INFO [ServerInfo] Java version: 1.6.0_10-beta,Sun Microsystems Inc.
20:22:01,577 INFO [ServerInfo] Java VM: Java HotSpot(TM) Server VM 11.0-b12,Sun Microsystems Inc.
20:22:01,577 INFO [ServerInfo] OS-System: Windows 2003 5.2,x86

[dimitris]

See? :-)

[jaikiran]

See? :-)

Yep, you were right. Not a JBoss issue :-)