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I presume you are talking about a problem along the lines of:
When building local references, XDoclet 1.2.1 erroneously uses the <ejb-ref> tag instead of the <ejb-local-ref> tagset, and puts the ejb/ path in the wrong place within these tags.
If you are, I resolved it by changing the JBOSS XDoclet definition (in the jboss_xml.xdt file in the plugins\sf.net.xdoclet_1.2.1\xdoclet-jboss-module-1.2.1.jar JAR).
Is this the problem you are having?