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In JBoss 5.1, ClusterPartition uses the same stack as the JBoss Cache indicated by the ClusterPartition's cacheHandler.
So, to create multiple ClusterPartition instances - first you'll need to create JBoss Cache configurations for every channel stack you need. Then, for each ClusterPartition instance, create a separate HAPartitionCacheHandler bean that references the corresponding cache that uses the desired stack.
Did that make sense?
What you say is exactly what I did and works correctly.