The problem is this:
for the second application. What you deploy first/second?
Could you check whether you, or a framwork, use this class!
Also you should provide a bit more details about your apps.
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So this is used as filter
2011-12-19 16:33:54,450 INFO [org.jboss.web.tomcat.service.deployers.TomcatDeployment] (main) deploy, ctxPath=/miis
16:33:55,051 ERROR [[/miis]] Exception starting filter AgentFilter
Some docs on using the filter are here
Also checked the logs, its SUN JDK. I wonder why is the class not found, if its not part of JDK it needs to be provided with that war.
commented out the AmAgentFilter in the deployment xml and now it works well. Thanks for the advice. Filter not required for test env.