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I resolve the issue by putting the 2 jars inside the ear package, as follows:
<fileset id="ear.lib.extras" dir="." description="extra jars for the EAR"> <include name="lib/commons-logging-1.0.4.jar" /> <include name="lib/commons-collections-3.2.jar" /> <include name="lib/jcommon.jar" /> <include name="lib/jfreechart.jar"/> </fileset>
But i am still not sure why the filterset is used in the jar.extras section, because this may corrupt any jar files used there.