The installer was tested only with the community version. I think we need a different configuration for EAP 6.
Just a note, the console is not part of the EAP, yet. That is why we are working only with the community version. If you use the installer it will replace the console shipped with EAP and this is not good under a support perspective. You may tri it only for development/testing purposes, it is not recomended for production environments.
I'll work on something and let you know.