Using FID, you can connect to multiple messaging queues and can listen for the messages. You can achieve this by configuring two brokers in the servers view, each listening to a broker on any machines. Then you can create messaging project and deploy it in the respective brokers in the server view. Under the messaging project you can create as many as listeners and can start reading the messages.
For more information look into the documentation provided under
FUSE? Integration Designer User Guide -> FUSE Messaging Tool.
Right now, using FID, you can connect to FUSE Messaging Broker/Active MQ only.