I have also tried doing a session.refresh(true);
immediately after session.save();
Still I don't see the node that was created in the earlier session.
Can you post your repository & Infinispan configuration ?
If you're using EAP 6.3.0 with Infinispan 5.3.0 I guess you're not using the ModeShape EAP subsystem (because EAP 6.3.0 uses Infinispan 5.2) but you're bundling everything in your app ?