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I would think that you need someway to fire jQuery again. Should be relatively easy.
I do my zebra-highlight rows without jQuery and I think that they would handle your situation:
<rich:dataTable onRowMouseOver="tableRowColor=this.style.backgroundColor;this.style.backgroundColor=tableRowHighlight" onRowMouseOut="this.style.backgroundColor=tableRowColor" rowClasses="tableRowOdd, tableRowEven"