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This is not a user forum!
Bug reports are posted here: http://jira.jboss.com/jira/browse/JBJTA
TransactionManager.setTransactionTimeOut does not work.
is not a bug report, it is an unqualified (and probably uneducated) assertion.
Two obvious misunderstandings:
1) TransactionManager is not an interface intended for user applications,
they should use UserTransaction.
2) setTransactionTimeout only applies to transactions *started after* this invocation on the *same thread*.
Also, bug reports should always be made against the latest JBoss version.
If you haven't tested jboss-3.2.6 you are just wasting everybodys time.