You may want to look into a samba solution.
ie... share your jboss folders in linux and mount them with your windows workstation. Then just point eclipse to them like any other folder on your hard drive.
Just make sure you use proper firewalling precautions.
Thanks for the response.
Is there any simpler way, meaning a way in Eclipse to specify the IP address of the Linux server and login/password of my Linux account, and Eclipse would then use the files from there?
I'd imagine that this is possible, but I haven't been able to figure out just how.