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I suspect that this is done by jt400, we have smilar implementations without similar problems.
Is your "libraries=..." working ? This should be onlye supported in native mode (naming=system).
<connection-url>jdbc:as400://10.1.1.1;block size=128;extended dynamic=true;package=JBOSS;package cache=true;package library=QGPL</connection-url>
the "libraries"-tag is working. We are using that because of triggers on db-files.
I can't really believe that this is caused by the IBM java toolbox. If we stop JBoss no further connect information is logged on the iSeries. Which JTOpen Version are you using?
I'm experiencing the very same thing on Linux (RH8), Sun JDK 1.4.2, JBoss 3.2.2, and Oracle. Oracle's listener is logging a connection every second or so. I've looked for a switch or something to turn that off or at least decrease the frequency in jboss, but am not talented enough to find one. Everything runs fine, except that the logs are filling up quite fast - 27,000 entries in the database logs in one day - today.
My DS looks identical to what's been posted, except for driver and url info.