Yeah, you caught it at a weird time. I posted the files, but due to a permissions problem I couldn't update the links on the docs page to indicate that it's a new version.
I'll definitely look at a better way to package it in a future release. The current packaging is the way it is mainly for historical reasons. It doesn't really need to be like that anymore, but I hadn't considered it a priority until I saw these comments.
For those curious, the biggest changes were the inclusion of the JSTL libraries, updates to the oracle and mysql instructions and the hibernate chapter. Everything else was simple corrections to the text.
J2EE 1.4 Tutorial Runs on Pointbase,not Cloudscape of J2EE RI Server.